This is the production order for the entire series. The production order tends to be the order in which scripts are written and/or filmed. Please note that the below list is not divided into seasons.

The Wrong Path
The Road to Calydon
Ares
Pride Comes Before a Brawl
Eye of the Beholder
The March to Freedom
As Darkness Falls
The Warrior Princess
The Festival of Dionysus
The Vanishing Dead
Gladiator
The Gauntlet
Unchained Heart
Outcast
The Other Side
What's in a Name?
The Fire Down Below
All That Glitters
The Mother of all Monsters
The King of Thieves
Let the Games Begin
Promises
Siege at Naxos
Under the Broken Sky
Highway to Hades
Cast a Giant Shadow
The Enforcer
King for a Day
The Sword of Veracity
Once a Hero
Heedless Hearts
The Cave of Echoes
Centaur Mentor Journey
The Wedding of Alcmene
The Power
The Apple
Protean Challenge
Monster Child in the Promised Land
Mercenary
The Green-Eyed Monster
Doomsday
Not Fade Away
The Lady and the Dragon
Mummy Dearest
Prince Hercules
A Star to Guide Them
The Lost City
Reign of Terror
Love Takes a Holiday
Long Live the King
When a Man Loves a Woman
Surprise
Encounter
Judgment Day
Atlantis
Two Men and a Baby
Les Contemptibles
The End of the Beginning
Prodigal Sister
War Bride
If I Had a Hammer...
A Rock and a Hard Place
Beanstalks and Bad Eggs
Stranger in a Strange World
Hero's Heart
...And Fancy Free
Web of Desire
Hercules on Trial
War Wounds
Regrets...I've Had a Few
Faith
One Fowl Day
Medea Culpa
Men in Pink
Yes, Virginia, There is a Hercules
Armageddon Now
Armageddon Now Part 2
Porkules
Twilight
My Fair Cupcake
Top God
Reunions
Just Passing Through
Descent
Resurrection
Render Unto Caesar
Darkness Rising
Genies and Grecians and Geeks, Oh My
Norse by Norsevest
For Those of You Just Joining Us
Somewhere Over the Rainbow Bridge
Let There Be Light
Redemption
Greece is Burning
Stranger and Stranger
Sky High
Love on the Rocks
We'll Always Have Cyprus...
Once Upon a Future King
Fade Out
The Academy
Revelations
My Best Girl's Wedding
Darkness Visible
Be Deviled
Full Circle
Rebel With a Cause
Hercules, Tramps & Thieves
Love, Amazon Style
A Wicked Good Time
City of the Dead